Citations

If you use SHRED in your research, please cite the following papers:

@article{williams2024sensing,
    title={Sensing with shallow recurrent decoder networks},
    author={Williams, Jan P and Zahn, Olivia and Kutz, J Nathan},
    journal={Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences},
    volume={480},
    number={2298},
    year={2024},
    publisher={The Royal Society}
}

@article{tomasetto2025reduced,
    title={Reduced order modeling with shallow recurrent decoder networks},
    author={Tomasetto, Matteo and Williams, Jan P and Braghin, Francesco and Manzoni, Andrea and Kutz, J Nathan},
    journal={Nature Communications},
    volume={16},
    number={1},
    pages={10260},
    year={2025},
    publisher={Nature Publishing Group UK London}
}

@article{rude2025shallow,
    title={Shallow Recurrent Decoders for Neural and Behavioral Dynamics},
    author={Rude, Amy S and Kutz, J Nathan},
    journal={bioRxiv},
    pages={2025--06},
    year={2025},
    publisher={Cold Spring Harbor Laboratory}
}

@article{gao2025sparse,
    title={Sparse identification of nonlinear dynamics and koopman operators with shallow recurrent decoder networks},
    author={Gao, Mars Liyao and Williams, Jan P and Kutz, J Nathan},
    journal={arXiv preprint arXiv:2501.13329},
    year={2025}
}

@article{yermakov2025t,
    title={T-SHRED: Symbolic Regression for Regularization and Model Discovery with Transformer Shallow Recurrent Decoders},
    author={Yermakov, Alexey and Zoro, David and Gao, Mars Liyao and Kutz, J Nathan},
    journal={arXiv preprint arXiv:2506.15881},
    year={2025}
}